PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100221890032

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 407aa MW: 45426.5 Da PI: 8.3803

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100221890032	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	84.9	8.1e-27	123	176	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+++ WtpeLH+rFv aveqL G++kA+P++ile+m+v +Lt+++++SHLQkYR+ Ote100221890032\|100221890032 123 KAKVGWTPELHRRFVTAVEQL-GIDKAVPSRILEIMGVACLTRHNIASHLQKYRS 176 67899**************.******************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.76	120	179	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-27	120	180	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-17	121	179	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-25	123	177	IPR006447	Myb domain, plants
Pfam	PF00249	4.7E-6	127	175	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MLAVKSERNE GESEMRGFSV EENEFVGGED LLDAIDFDGF FAGFSDGDVL PDLEMDHEAV 60 AELSSSESEN KSGKSENAAP DSDVGLESPV KIPEKETVST MAEPESVRNR ASKEAERSGK 120 KKKAKVGWTP ELHRRFVTAV EQLGIDKAVP SRILEIMGVA CLTRHNIASH LQKYRSQRKH 180 LQAREAEAAR WSRRRQIYGS ATAPTQLNHW IAPAMGFPPV TPVPHYRPLH VWGHPSVDQS 240 LMYTWPKHVA PPSHAWPPPL ADPSFWHPPH PYTFPPAAAA GGDAPTAQTV PRTACDVHPV 300 IFILLHKLYA FELRLKNRII EGEYRCSHRR RNNKAMVAAA IGAKATVYGQ CDTRTTTPRR 360 IENTSNLTIY LLINQLLASP SLRKINCELE IHKNANICEF ASTKKRQ

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MLAVKSERNE GESEMRGFSV EENEFVGGED LLDAIDFDGF FAGFSDGDVL PDLEMDHEAV  60
AELSSSESEN KSGKSENAAP DSDVGLESPV KIPEKETVST MAEPESVRNR ASKEAERSGK  120
KKKAKVGWTP ELHRRFVTAV EQLGIDKAVP SRILEIMGVA CLTRHNIASH LQKYRSQRKH  180
LQAREAEAAR WSRRRQIYGS ATAPTQLNHW IAPAMGFPPV TPVPHYRPLH VWGHPSVDQS  240
LMYTWPKHVA PPSHAWPPPL ADPSFWHPPH PYTFPPAAAA GGDAPTAQTV PRTACDVHPV  300
IFILLHKLYA FELRLKNRII EGEYRCSHRR RNNKAMVAAA IGAKATVYGQ CDTRTTTPRR  360
IENTSNLTIY LLINQLLASP SLRKINCELE IHKNANICEF ASTKKRQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	1e-14	121	175	3	57	ARR10-B
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100244.1	1e-86	PREDICTED: probable transcription factor GLK1
Swissprot	Q9SIV3	2e-64	GLK1_ARATH; Transcription activator GLK1
TrEMBL	A0A061E3A4	6e-81	A0A061E3A4_THECC; GBF's pro-rich region-interacting factor 1
STRING	GLYMA13G37010.1	2e-78	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2532	23	56